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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1470332_1470936_F

Intron Information:

Intron Rank:
145670
Intron Class:
major
Intron Phase:
Intron Coordinates:
1470332 - 1470936
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTGATTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
73.4
41
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
58.1
0.23
1.6
66.44
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028495
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044828
1435741 - 1471126
35386