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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_14754_15078_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14754 - 15078
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAATC
Flanking Amino Acid:
GLNRTGYLVCRYLIDVEGME
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.7
0.58
1
73.6
41.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
72.6
0.69
1.5
79.43
36

Associated Gene:

Gene:
DUSP11
Ensembl Gene ID:
ENSAPLG00000029385
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039096
11884 - 16882
4999
ENSAPLT00000045933
12642 - 17198
4557