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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1476678_1489465_F

Intron Information:

Intron Rank:
145665
Intron Class:
major
Intron Phase:
Intron Coordinates:
1476678 - 1489465
Intron Length:
12788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTAATTGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
51.4
0.02
2
67.15
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028495
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036529
1467721 - 1489623
21903