About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_148017_163190_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148017 - 163190
Intron Length:
15174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
GCTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
TGTTCCATATGT
Flanking Amino Acid:
LRDNRTLLKTMNTVFHSNIQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
80.5
0.69
0.8
72.9
37.4
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
51.6
0.13
2.2
77.83
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022138
118388 - 173720
55333