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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_150753_163190_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150753 - 163190
Intron Length:
12438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
CAGGGCTAATCC
Flanking Amino Acid:
LRDNRTLLKTFFWVLLIIFL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
38.4
-0.9
2.2
42.33
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008222
118388 - 196017
77630
ENSAPLT00000044748
118388 - 173720
55333