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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_163377_195888_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163377 - 195888
Intron Length:
32512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
ACTTCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATCTCATACTT
Flanking Amino Acid:
LSSPKIFWELILGLMILCIG
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.5
41.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.7
0.67
0.8
70.1
35.8
Minor 5ss
42.6
-0.8
3.1
54.1
44.6
Minor BPS
46.3
-0.2
1.8
62.86
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007904
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008222
118388 - 196017
77630