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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1650035_1654353_R

Intron Information:

Intron Rank:
145816
Intron Class:
major
Intron Phase:
Intron Coordinates:
1650035 - 1654353
Intron Length:
4319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GGCTTCAGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.1
33.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
50.2
0.01
2.8
73.9
42.5
Minor BPS
42
-0.5
1.8
54.89
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025842
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045663
1648959 - 1669977
21019
ENSAPLT00000035814
1648959 - 1669977
21019
ENSAPLT00000019939
1648959 - 1659305
10347