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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1654550_1667661_R

Intron Information:

Intron Rank:
145821
Intron Class:
major
Intron Phase:
Intron Coordinates:
1654550 - 1667661
Intron Length:
13112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTCTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
54.9
0.15
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025842
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041293
1653814 - 1674398
20585
ENSAPLT00000045663
1648959 - 1669977
21019