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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1669476_1669573_R

Intron Information:

Intron Rank:
145827
Intron Class:
major
Intron Phase:
Intron Coordinates:
1669476 - 1669573
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
GCTTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.1
59.5
38.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.9
0.52
0.9
65.1
41.2
Minor 5ss
38.8
-1.3
3
46.6
43.7
Minor BPS
64.5
0.43
1.4
69.02
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025842
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045663
1648959 - 1669977
21019