Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1735784_1736870_R

Intron Information:

Intron Rank:

143594

Intron Class:

major

Intron Phase:

Intron Coordinates:

1735784 - 1736870

Intron Length:

1087

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATT

5'SS Class:

strong_major

3'SS Sequence:

AGTAACTTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTGAA

U12 Branch Point Sequence:

TTGAAAGTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

87.7

Major BPS

67.1

0.42

37.9

Major PPT

0.47

62.5

43.3

Minor 5ss

32.8

-2

3.3

47.8

47.9

Minor BPS

45.6

-0.2

2.4

71.09

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029870

1735678 - 1737973

2296