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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1810887_1811090_R

Intron Information:

Intron Rank:
134925
Intron Class:
major
Intron Phase:
Intron Coordinates:
1810887 - 1811090
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAACTC
5'SS Class:
major
3'SS Sequence:
TTATTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTATTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
68.3
36.8
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.2
0.72
1
80
37.3
Minor 5ss
30.4
-2.2
3.3
41.7
45
Minor BPS
73.1
0.72
1.1
78.22
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019947
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047116
1810880 - 1820338
9459