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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1887438_1890188_R

Intron Information:

Intron Rank:
135896
Intron Class:
major
Intron Phase:
Intron Coordinates:
1887438 - 1890188
Intron Length:
2751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ACTCATGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81
0.7
0.7
79.8
25.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
46.1
-0.2
2.1
64.24
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020527
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043424
1886332 - 1899425
13094