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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1890298_1892945_R

Intron Information:

Intron Rank:
135895
Intron Class:
major
Intron Phase:
Intron Coordinates:
1890298 - 1892945
Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TTCCCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTCCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.7
0.71
0.7
73.4
31.6
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
62.9
0.4
1.9
79.96
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020527
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036263
1889254 - 1893862
4609