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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1890298_1899379_R

Intron Information:

Intron Rank:
135897
Intron Class:
major
Intron Phase:
Intron Coordinates:
1890298 - 1899379
Intron Length:
9082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTCCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.7
0.71
0.7
73.4
31.6
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
62.9
0.4
1.9
79.96
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020527
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043424
1886332 - 1899425
13094