About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1978258_1979187_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1978258 - 1979187
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTGTGAAAT
Flanking Amino Acid:
FISHVLALGLGIYIGKRLTT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
48.4
-0
2.2
75.47
40.7

Associated Gene:

Gene:
BNIP3L
Ensembl Gene ID:
ENSAPLG00000008709
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009075
1978209 - 1984798
6590