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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1980220_1982058_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1980220 - 1982058
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TGTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TGACTGTTACAA
Flanking Amino Acid:
MHTSKDSSSQSEEEAVEGEK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
81.2
0.7
0.9
77.7
40.6
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
41.3
-0.6
2.2
51.32
39.8

Associated Gene:

Gene:
BNIP3L
Ensembl Gene ID:
ENSAPLG00000008709
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009075
1978209 - 1984798
6590