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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1982132_1983808_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1982132 - 1983808
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
ACATAATGAAAT
Flanking Amino Acid:
SSSRGSSHCDSPSPQDDGQI
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
80.4
0.68
0.8
78.7
34.9
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
44.6
-0.3
1.9
60.41
41.9

Associated Gene:

Gene:
BNIP3L
Ensembl Gene ID:
ENSAPLG00000008709
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009075
1978209 - 1984798
6590