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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_1983956_1984694_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1983956 - 1984694
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCTTTTCA
5'SS Class:
weak_major
3'SS Sequence:
GCAACGGCAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCAGAT
U12 Branch Point Sequence:
TGCAGATGAACG
Flanking Amino Acid:
TVLHFVLFVVNNDNGNGKNG
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.3
56.8
36.8
Major BPS
58.9
0.22
1.2
54.7
43.1
Major PPT
47.5
-0.1
1
35.7
35
Minor 5ss
43.8
-0.7
2.4
50.9
39.7
Minor BPS
42
-0.7
2.1
47.21
45

Associated Gene:

Gene:
BNIP3L
Ensembl Gene ID:
ENSAPLG00000008709
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009075
1978209 - 1984798
6590