Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2002598_2003192_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2002598 - 2003192

Intron Length:

595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AGAGCTTTGATT

Flanking Amino Acid:

NAAQFLLSTNDKTIKLWKIS

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

0.85

0.9

39.9

Major PPT

88.3

0.86

0.7

83.7

24.4

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

56.1

0.27

1.4

66.15

38.9

Associated Gene:

Gene:

PPP2R2A

Ensembl Gene ID:

ENSAPLG00000008811

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019688

1998551 - 2040967

42417

ENSAPLT00000009226

1998551 - 2035412

36862