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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2003359_2005860_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2003359 - 2005860
Intron Length:
2502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGACTTG
5'SS Class:
weak_major
3'SS Sequence:
ATTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GATCATTTAATT
Flanking Amino Acid:
RWSVWFLNLQNKTQSHSRGE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.4
53.9
45.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.4
0.75
0.7
81.8
29.4
Minor 5ss
40.8
-1
3.3
55.5
48.8
Minor BPS
60.2
0.4
1.5
72.67
37.9

Associated Gene:

Gene:
PPP2R2A
Ensembl Gene ID:
ENSAPLG00000008811
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009226
1998551 - 2035412
36862