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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2003359_2007721_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2003359 - 2007721
Intron Length:
4363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GATCATTTAATT
Flanking Amino Acid:
RVVIFQQEQENKTQSHSRGE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.4
0.75
0.7
81.8
29.4
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
60.2
0.4
1.5
72.67
37.9

Associated Gene:

Gene:
PPP2R2A
Ensembl Gene ID:
ENSAPLG00000008811
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019688
1998551 - 2040967
42417