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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2005957_2007721_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2005957 - 2007721
Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTTCACA
Flanking Amino Acid:
RVVIFQQEQESSTDGSSDAE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.5
0.64
0.9
73.7
36.9
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
64.2
0.44
1.7
75.62
35.9

Associated Gene:

Gene:
PPP2R2A
Ensembl Gene ID:
ENSAPLG00000008811
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009226
1998551 - 2035412
36862