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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2033371_2036614_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2033371 - 2036614
Intron Length:
3244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTTTTTGCATT
Flanking Amino Acid:
HTCFQILPNLRAGGGNDIQW
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
49.9
0.08
1.8
74.22
37.3

Associated Gene:

Gene:
PPP2R2A
Ensembl Gene ID:
ENSAPLG00000008811
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019688
1998551 - 2040967
42417