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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2072518_2072806_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2072518 - 2072806
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATTAATGACT
Flanking Amino Acid:
HYKLQLLYSNGVRTEQDLYV
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74
0.54
0.8
66
35.9
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
48.8
-0
1.9
70.79
39.5

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033630
2068972 - 2203356
134385
ENSAPLT00000009678
2068972 - 2203442
134471
ENSAPLT00000036458
2068972 - 2194724
125753