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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2072863_2073234_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2072863 - 2073234
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
VRLIDSVTKQPITYEGQNKN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.2
0.75
0.7
81.6
29.1
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009678
2068972 - 2203442
134471
ENSAPLT00000036458
2068972 - 2194724
125753
ENSAPLT00000033630
2068972 - 2203356
134385