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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2079884_2169004_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2079884 - 2169004
Intron Length:
89121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTATGCTTAATA
Flanking Amino Acid:
ETPSDPVIIDRFFLKFFLKC
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.1
0.72
0.9
73.5
41.7
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
64.7
0.46
1.8
71.78
40.8

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036458
2068972 - 2194724
125753
ENSAPLT00000033630
2068972 - 2203356
134385
ENSAPLT00000009678
2068972 - 2203442
134471