Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2178554_2180330_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2178554 - 2180330

Intron Length:

1777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATAT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTTGTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAT

U12 Branch Point Sequence:

CTAATCGGATGC

Flanking Amino Acid:

RRARRLDPSEATPCIKAISP

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

77.7

33.3

Major BPS

69.6

0.49

1.1

69.5

Major PPT

0.61

0.9

76.8

37.4

Minor 5ss

38.2

-1.3

3.4

55.2

Minor BPS

33.6

-1.2

2.1

39.83

39.5

Associated Gene:

Gene:

EBF2

Ensembl Gene ID:

ENSAPLG00000009260

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036458

2068972 - 2194724

125753

ENSAPLT00000033630

2068972 - 2203356

134385

ENSAPLT00000009678

2068972 - 2203442

134471