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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2189950_2191059_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2189950 - 2191059
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCATCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTACTATCT
Flanking Amino Acid:
HPGDPERLAKEMLLKRAADL
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.4
0.41
0.9
58.7
38
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
48.5
-0
2.1
76.16
40.1

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036458
2068972 - 2194724
125753
ENSAPLT00000033630
2068972 - 2203356
134385
ENSAPLT00000009678
2068972 - 2203442
134471