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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2191126_2191234_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2191126 - 2191234
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
CTTCACTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CATTCCTGAAGT
Flanking Amino Acid:
ALYGTPHNNQDIILKRAADI
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
74.7
0.56
0.9
68.9
36.7
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
62.8
0.48
1.8
78.11
43.8

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033630
2068972 - 2203356
134385
ENSAPLT00000009678
2068972 - 2203442
134471
ENSAPLT00000036458
2068972 - 2194724
125753