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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2191413_2192831_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2191413 - 2192831
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCATTGACA
Flanking Amino Acid:
ISESAQGNNQGYIRNTSSIS
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
72.9
0.72
1.5
82.37
31.4

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009678
2068972 - 2203442
134471
ENSAPLT00000036458
2068972 - 2194724
125753
ENSAPLT00000033630
2068972 - 2203356
134385