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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2193018_2194494_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2193018 - 2194494
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTTCTGATGA
Flanking Amino Acid:
NGSPTGSPYGIMSSSPTVGS
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.3
34.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
43.1
-0.8
3.1
59
39.8
Minor BPS
45.9
-0.3
2
56.62
42.7

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036458
2068972 - 2194724
125753
ENSAPLT00000033630
2068972 - 2203356
134385
ENSAPLT00000009678
2068972 - 2203442
134471