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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2194663_2203324_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2194663 - 2203324
Intron Length:
8662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTGTCAATT
Flanking Amino Acid:
CSSGNGNGFRAMTGLVVPPM
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
51.3
0.12
2.2
75.15
42.4

Associated Gene:

Gene:
EBF2
Ensembl Gene ID:
ENSAPLG00000009260
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033630
2068972 - 2203356
134385