About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2289703_2290095_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2289703 - 2290095
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTGCCTATAAAT
Flanking Amino Acid:
LKSVSGPDHKFPSIVPDTNY
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
49.7
0.05
1.8
67.51
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048050
2288827 - 2299488
10662
ENSAPLT00000032538
2288827 - 2299420
10594
ENSAPLT00000027338
2288827 - 2299488
10662