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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2290955_2291716_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2290955 - 2291716
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAT
U12 Branch Point Sequence:
TCTTCTGCATCT
Flanking Amino Acid:
ITTSAAKKTQRTKHASSGKR
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
71.8
0.54
1.2
71.9
41
Major PPT
77.1
0.61
0.9
73.5
36.9
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
46.2
-0.2
2.4
71.47
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048050
2288827 - 2299488
10662
ENSAPLT00000032538
2288827 - 2299420
10594
ENSAPLT00000027338
2288827 - 2299488
10662