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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2292931_2293538_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2292931 - 2293538
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTTCATATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
EDLSPVENTTVKESDKSYTM
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79
0.65
0.9
73.4
35.2
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027338
2288827 - 2299488
10662