Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2293410_2293538_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2293410 - 2293538

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCTTG

5'SS Class:

weak_major

3'SS Sequence:

TGCTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAA

U12 Branch Point Sequence:

TAAAAGTTAAAT

Flanking Amino Acid:

EDLSPVENTTEVTGVAAESA

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.2

69.7

43.7

Major BPS

77.5

0.68

0.8

76.2

24.6

Major PPT

84.9

0.78

0.8

76.9

37.4

Minor 5ss

60.6

0.36

2.4

73.2

43.7

Minor BPS

45.8

-0.2

2.3

65.76

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032538

2288827 - 2299420

10594

ENSAPLT00000048050

2288827 - 2299488

10662