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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2293618_2293701_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2293618 - 2293701
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCATCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
LPQPNFDCDDQCVEPLEELR
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.7
0.33
1.1
63
37.2
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048050
2288827 - 2299488
10662
ENSAPLT00000032538
2288827 - 2299420
10594
ENSAPLT00000027338
2288827 - 2299488
10662