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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2294529_2294647_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2294529 - 2294647
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTCTA
5'SS Class:
major
3'SS Sequence:
TAAATTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCACTTAAAT
Flanking Amino Acid:
PPKELTDCIKVYSADTVGSG
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
70.1
42
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
0.9
69.3
41.1
Minor 5ss
32.8
-2
3.1
41.5
44.9
Minor BPS
66.1
0.58
1.6
81.85
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048050
2288827 - 2299488
10662
ENSAPLT00000032538
2288827 - 2299420
10594
ENSAPLT00000027338
2288827 - 2299488
10662