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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2295466_2296393_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2295466 - 2296393
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTACA
5'SS Class:
major
3'SS Sequence:
TAACTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATTCTTGTAACT
Flanking Amino Acid:
VTVTEPALSKEWAYKQHNPI
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
73.7
36.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.3
0.61
0.9
69.9
40.9
Minor 5ss
35
-1.7
2.8
44.1
43
Minor BPS
57.1
0.3
2
79.06
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024715
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048050
2288827 - 2299488
10662
ENSAPLT00000032538
2288827 - 2299420
10594
ENSAPLT00000027338
2288827 - 2299488
10662