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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2302469_2303132_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2302469 - 2303132
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
GGLIDDIALIRDDDVLFVCE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
84.3
23.5
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076