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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2304574_2305199_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2304574 - 2305199
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTAACA
Flanking Amino Acid:
LIVNDGINLLGVLEEARFFG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.4
0.66
0.9
81.2
36.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
65.4
0.48
1.8
77.9
38.4

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076