About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2305466_2305900_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2305466 - 2305900
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
TPTKSELRCQGLNFSGADLS
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076