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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2306051_2306453_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2306051 - 2306453
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATGAATC
Flanking Amino Acid:
RADLSGSVLDCANLQGVKML
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.2
0.59
0.9
75.5
34.1
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
61.8
0.35
1.7
73.75
36.5

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076