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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2306560_2306805_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2306560 - 2306805
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTTTTTGCATT
Flanking Amino Acid:
DPSGLKANLEGANLKGVDME
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
79.2
0.66
0.9
71.1
39.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
54.5
0.22
1.9
79.72
37

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076