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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2306940_2307711_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2306940 - 2307711
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATACTTAATC
Flanking Amino Acid:
GATLAGTDLENCDLSGCDLQ
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
86.5
0.82
0.7
85.6
29.2
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
70
0.61
1.4
73.91
36.3

Associated Gene:

Gene:
KCTD9
Ensembl Gene ID:
ENSAPLG00000009567
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010011
2300753 - 2307828
7076