Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2313339_2314030_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2313339 - 2314030

Intron Length:

692

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCAATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

TCCTCATGAAGG

Flanking Amino Acid:

VDNLGELFQEIANDMEKIGE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.7

33.5

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

71.1

0.47

67.4

Minor 5ss

39.1

-1.2

50.2

46.2

Minor BPS

46.5

-0.4

2.1

53.08

47.3

Associated Gene:

Gene:

GNRH1

Ensembl Gene ID:

ENSAPLG00000009893

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010294

2313198 - 2316104

2907