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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2314127_2316062_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2314127 - 2316062
Intron Length:
1936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
PQFTDLKEAMASLIEGEARR
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.7
0.6
1
68.8
42.1
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
GNRH1
Ensembl Gene ID:
ENSAPLG00000009893
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010294
2313198 - 2316104
2907