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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2330485_2330595_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2330485 - 2330595
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTTGTGTTAAGT
Flanking Amino Acid:
VEKQYGVITLPPSLTERKPS
Intron Amino Acid Position:
1629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
51.1
0.11
2.4
78.66
44.1

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944