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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2331627_2333705_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2331627 - 2333705
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTG
5'SS Class:
major
3'SS Sequence:
TCTTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GGTTATATAATC
Flanking Amino Acid:
VMGGYTNYEKAFFTEKYLQE
Intron Amino Acid Position:
1555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83
0.74
0.8
81.2
30.9
Minor 5ss
40.6
-1
3.3
54.5
49.7
Minor BPS
49.6
-0
1.8
62.01
37

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944