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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_2334416_2335189_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2334416 - 2335189
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTCTCTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
GEKDPENEFATMWIERTTYT
Intron Amino Acid Position:
1467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
68.7
0.42
0.9
63.5
37.2
Minor 5ss
37.6
-1.4
3.2
60.2
44.1
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
DOCK5
Ensembl Gene ID:
ENSAPLG00000010000
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024019
2326313 - 2380223
53911
ENSAPLT00000021232
2326313 - 2380223
53911
ENSAPLT00000010625
2326280 - 2380223
53944